Massachusetts Institute of Technology
Merck Genome Research Institute
Beth Israel Deaconess Medical Center
St. Jude Children's Research Hospital
Upper Austria University of Applied Sciences
About SCANSITE
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| News |
January 6, 2011:
All features of Scansite are now working again! :)
October 9, 2009:
The Swiss-Prot and TrEMBL databases were updated to their Sept. 22nd 2009 releases. This brings the number of proteins to 509,019 in Swiss-Prot and 9,325,547 in TrEMBL. October 8, 2009: The Scansite server will go down tonight at 10 p.m. U.S. Eastern time to update the Swiss-Prot and TrEMBL protein databases. The update is expected to take 4 hours. NOTE: During heavy usage times, protein domains from Pfam may not be displayed in the Motif Scan graphics, because Pfam allows only one simultaneous request from the same IP address. If this happens, you can retrieve the domains directly from Pfam after finding the motifs in Scansite. Read about the new features of Scansite 2.0. |
Motif Scan
- Scan a Protein by Accession Number or ID
- Scan a Protein by Input Sequence
- Scan Input Sequence with an Input Motif
- Scan Many Proteins Simultaneously
Database Search
- Search Using a Scansite Motif
- Search Using an Input Motif
- Search Using Quick Matrix Method
- Search Using Multiple Motifs
Sequence Match
- Search Databases for Sequence Pattern
- Search Databases for Two Sequence Patterns
- Search Databases for Regular Expression
Common Utilities
- Calculate Molecular Weight and Isoelectric Point
- Calculate Amino Acid Composition Around S/T/Y Sites
Referencing Scansite
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Note: Scansite works best with standards-compliant browsers, such as Firefox, Mozilla, Netscape, Opera, Galeon, Safari, and Konqueror. Internet Explorer users may have problems and are encouraged to use an alternative.
Comments or questions? Contact Dr. John Obenauer.